Table 3 |
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|
Percentage nucleotide/amino acid identity for the envelope genes among Culexflavivirus isolates from different countries and genotypes |
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|
GENOTYPE 1 |
GENOTYPE 2 |
|||||||||
|
|
||||||||||
|
China |
Japan |
Indonesia |
Texas |
Iowa |
Mexico |
Guatemala |
Trinidad |
Uganda |
||
|
|
||||||||||
|
China |
-- |
94.6 |
94.8 |
94.5 |
94.4 |
89.4 |
89.7 |
89.6 |
90.2 |
|
|
|
||||||||||
|
Japan |
98.6 |
-- |
97.5 |
97.4 |
97.4 |
89.1 |
89.3 |
89.3 |
90.2 |
|
|
|
||||||||||
|
GEN 1 |
Indonesia |
98.4 |
99.3 |
-- |
97.4 |
97.3 |
89.9 |
90.1 |
90.1 |
90.9 |
|
|
||||||||||
|
Texas |
98.6 |
99.5 |
99.3 |
-- |
99.6 |
89.8 |
89.9 |
89.5 |
90.6 |
|
|
|
||||||||||
|
Iowa |
98.6 |
99.5 |
99.3 |
100 |
-- |
90 |
90.2 |
89.8 |
90.8 |
|
|
|
||||||||||
|
Mexico |
97.9 |
97.4 |
97.2 |
97.4 |
97.4 |
-- |
99.2 |
98.4 |
97.9 |
|
|
|
||||||||||
|
Guatemala |
97.9 |
97.4 |
97.2 |
97.4 |
97.4 |
100 |
-- |
98.4 |
97.9 |
|
|
|
||||||||||
|
GEN 2 |
Trinidad |
97.9 |
97.4 |
97.2 |
97.4 |
97.4 |
100 |
100 |
-- |
98 |
|
|
||||||||||
|
Uganda |
97.9 |
97.4 |
97.2 |
97.4 |
97.4 |
99.5 |
99.5 |
99.5 |
-- |
|
|
|
||||||||||
|
Percentage nucleotide and amino acid homology between and amongst genotypes and countries; nucleotide divergence is displayed in bold type in upper triangle, amino acid homology is displayed in regular type in lower triangle. Alignments were performed using the following CxFV isolates: SDDM06-11 (China), NIID-21-2 (Japan), Surabaya (Indonesia), TX 24518 (Texas), 380 (Iowa) belonging to Genotype 1 and CxFV-Mex07 (Mexico), Izabal (Guatemala), TR3116 (Trinidad) and Uganda08 (Uganda) belonging to Genotype 2. |
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|
Huanyu et al. Virology Journal 2012 9:73 doi:10.1186/1743-422X-9-73 |
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