Table 3

Computationally predicted differentially expressed genes
Contig ID Gen ID Non-redundant polypeptide (NCBI) Biological process (GO) Symptomatic vs. Mock Recovered vs. Mock
Mapped reads Predicted fold change qRT- PCR fold change Mapped reads Predicted fold change qRT- PCR fold change
S M R M
Pepper05849(839 bp) Pepper-RRP1 Putative kiwellin ripening-related protein precursor [S. tuberosum] Gene Ontology annotation was not found 225 1 69.5 138.6 217 1 66.9 38.4
Pepper00302(756 bp) Pepper-PR5 PR5-like protein [C. annuum] Response to salt stress and bacterium. 81 1 25 6.4 79 1 24.3 2.6
Pepper25924(1224 bp) Pepper-ANN PREDICTED: annexin D4 [Vitis vinifera] Response to abscisic acid stimulus and osmotic stress 192 8 7.4 6.3 207 8 7.9 2.4
Pepper27731(1768 bp) Pepper-CPD Carboxypeptidase type III [Theobroma cacao] Gene Ontology annotation was not found 150 7 6.6 6.7 143 7 6.3 2.7
Pepper28222(845 bp) Pepper-GST1 Glutathione S-transferase (GST1) [C. chinense] Defense response to bacterium, salt stress, defense, cold, toxin catabolic process 187 12 4.8 4.4 204 12 5.2 2.2
Pepper26071(1240 bp) Pepper-OPR1 12-oxophytodienoate reductase 1 (OPDA-reductase 1) (LeOPR1) Jasmonic acid biosynthetic process 170 19 2.7 3.4 155 19 2.5 2.1
Pepper31770(1251 bp) Pepper-HSP70 Heat shock 70 kDa protein Response to cadmium ion, protein folding, bacterium, heat, high light intensity, hydrogen peroxide and virus. 303 36 2.6 2.9 323 36 2.7 1.3

Góngora-Castillo et al.

Góngora-Castillo et al. Virology Journal 2012 9:295   doi:10.1186/1743-422X-9-295

Open Data