Table 1

Summary of nine 454-pyrosequencing runs used in this study
Tissue Number of runs Total no. reads Average length (nt) Average quality
Mocka 1 222,558 99.4 27.8
Symptomaticb 5 865,103 98.6 28.1
Recoveredc 3 750,906 101.7 27.5
Total 9 1,838,567 99.8

a Pool of mock-inoculated leaf tissue sampled at 9, 15 and 20 dpi.

b Pool of symptomatic leaf tissue sampled at 9 dpi. A single run had low quality sequences and thus was discarded from downstream analyses. A total of 770,694 sequences from a total of 4 runs were used in downstream analyses of symptomatic tissues.

c Pool of recovered leaf tissue sampled at 20 dpi.

Góngora-Castillo et al.

Góngora-Castillo et al. Virology Journal 2012 9:295   doi:10.1186/1743-422X-9-295

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