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Genetic diversity and recombination analysis of sweepoviruses from Brazil

Leonardo C Albuquerque13, Alice K Inoue-Nagata1*, Bruna Pinheiro1, Renato O Resende2, Enrique Moriones3 and Jesús Navas-Castillo3

Author Affiliations

1 Embrapa Vegetables, Km 09, BR060, Cx. Postal 218, Brasília, DF, CEP 70359-970, Brazil

2 Departamento de Biologia Celular, Universidade de Brasília, CEP 70.910-970, Brasília, DF, Brazil

3 Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora” (IHSM-UMA-CSIC), Consejo Superior de Investigaciones Científicas, Estación Experimental “La Mayora”, 29750, Algarrobo-Costa, Málaga, Spain

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Virology Journal 2012, 9:241  doi:10.1186/1743-422X-9-241

Published: 20 October 2012

Additional files

Additional file 1:

Iterative elements [I, II and III direct (virion-sense) and IV inverted (complementary-sense) repeats] and corresponding iteron-related domains in the 5′-terminal regions of the Rep gene (Rep IRD) of sweepoviruses. Presumed iteron and Rep IRD sequences are colored as follows, blue for the IYVV, SPLCV-ES and SPLCV-IT group; pink for SPLCV-US[Lou:24]; and green for SPLCESV. The three different Rep IRDs present in this study are shown in bold.

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Additional file 2:

Sweepovirus information: Complete names and color representations of the pairwise sequence identity percentages (calculated with Clustal V, included in MegAlign-DNASTAR) of the complete genome sequences of sweepovirus isolates reported here and those available in the public sequence databases. The isolates present in this study are shown in bold.

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