Table 3

Similarity comparison of nucleotide and amino acid sequences of Asia1/WHN/CHA/06 to other FMDV Asia1 type isolates

Asia1/WHN/CHA/06

Nucleotide (amino acid) sequence similarity (%) with Asia1/WHN/CHA/06


JS/CHA/05

ZB/CHA/58

HNK/CHA/05

IND/321/01

YNBS/58

PAK/1/54


5'UTR

96.8

86.3

84.0

86.7

85.8

84.4

S

95.1

83.3

77.9

83.3

83.3

78.7

5'LF-UTR

98.3

88.5

87.8

89.0

89.0

88.1

FUR

96.5

87.6

88.4

89.9

88.4

88.8

IRES

99.3

89.4

89.0

89.0

86.8

88.5

ORF

98.5 (97.7)

89.8 (94.9)

89.7 (95.7)

89.6 (95.5)

89.7 (95.1)

89.6 (96.3)

L

98.3 (98.5)

84.2 (90.0)

87.7 (95.0)

86.2 (92.5)

83.9 (89.6)

86.7 (96.0)

VP4

99.2 (100.0)

89.8 (97.6)

91.8 (100.0)

90.2(100.0)

89.0 (96.5)

92.2 (98.8)

VP2

98.9 (98.6)

87.4 (92.7)

87.4 (95.0)

86.1 (94.5)

87.5 (93.2)

86.5 (95.4)

VP3

99.7 (100.0)

88.8 (95.9)

86.9 (96.8)

84.4 (96.3)

88.5 (95.9)

87.2 (96.8)

VP1

98.9 (99.1)

85.5 (93.4)

82,1 (89.6)

81.4 (87.7)

84.2 (91.5)

84.0 (87.7)

2A

100.0(100.0)

83.3 (93.8)

95.8 (100.0)

89.6(100.0)

85.6(100.0)

95.8(100.0)

2B

98.5 (98.7)

93.3 (96.1)

93.3 (96.8)

94.4 (97.4)

94.2 (97.4)

91.3 (98.7)

2C

96.6 (97.2)

93.1 (97.2)

91.7 (95.9)

93.1 (96.9)

92.3 (95.9)

92.6 (97.2)

3A

98.7 (98.0)

89.1 (89.5)

89.5 (93.5)

91.3 (94.1)

90.8 (92.8)

88.9 (92.8)

3B

93.4 (95.8)

92.5 (93.0)

97.7 (100.0)

93.4 (97.2)

92.5 (93.0)

93.4 (98.6)

3C

97.5 (99.5)

90.1 (97.2)

92.5 (97.7)

92.5 (97.7)

90.1 (96.7)

90.6 (98.6)

3D

99.1 (99.1)

93.2 (98.1)

93.5 (98.1)

92.6 (97.0)

93.0 (98.1)

93.1 (98.1)

3'UTR

87.1

81.7

87.1

74.2

76.3

87.1

Complete

98.5

90.5

90.3

90.2

90.5

90.3


a The interests of the names of the fragments and data are indicated in boldface.

b Similarity rates of amino acid are shown in brackets.

Yang et al. Virology Journal 2011 8:175   doi:10.1186/1743-422X-8-175

Open Data