Table 4

Percent amino acid identity of the JCV predicted proteins amongst the three viruses

Percent amino acid identity (total protein length in amino acids)


Virus pair

N (235)

NSs (92)

M poly (1444)

GNa (286)

NSMb (163)

GCc (969)

L (2263)


JCV/61/CO-cl & JCV/03/CT-cl

97

93

94

98

91

94

97

JCV/61/CO-cl & JCV/04/CT-cl

98

92

94

99

98

94

99

JCV/03/CT-cl & JCV/04/CT-cl

97

91

96

99

91

96

97


a For this comparison, GN is defined as amino acids 16-301 of the M polyprotein.

b For this comparison, NSM is defined as amino acids 302-464 of the M polyprotein.

c For this comparison, GC is defined as amino acids 476-1444 of the M polyprotein.

Bennett et al. Virology Journal 2011 8:136   doi:10.1186/1743-422X-8-136

Open Data