Table 2 |
||||
|
Summary of patient tissues and fluids used for the detection of HPV. |
||||
|
Sample |
Sample origin |
HPV (previously typed) |
HPV E1 qPCR |
HPV L1 qPCR |
|
|
||||
|
962046 |
anal virapap swab |
11 |
+ |
11 |
|
|
||||
|
950450 |
anal virapap swab |
16 |
+ |
16 |
|
|
||||
|
972696 |
anal virapap swab |
33‡ |
+ |
- |
|
|
||||
|
971380 |
anal virapap swab |
35‡ |
+ |
- |
|
|
||||
|
000699 |
anal virapap swab |
40* |
+ |
- |
|
|
||||
|
061675 |
anal virapap swab |
45§ |
+ |
- |
|
|
||||
|
983165 |
anal virapap swab |
52‡ |
+ |
- |
|
|
||||
|
972762 |
anal virapap swab |
54 |
+ |
- |
|
|
||||
|
972666 |
anal virapap swab |
59§ |
+ |
- |
|
|
||||
|
980280 |
anal virapap swab |
69 |
+ |
- |
|
|
||||
|
980520 |
anal virapap swab |
73 |
+ |
- |
|
|
||||
|
950474 |
anal virapap swab |
83 |
+ |
- |
|
|
||||
|
081673 |
anal virapap swab |
89 |
+ |
- |
|
|
||||
|
950472 |
anal virapap swab |
16,53 |
+ |
16 |
|
|
||||
|
950508 |
anal virapap swab |
56,68§,84 |
+ |
- |
|
|
||||
|
950504 |
anal virapap swab |
6,11,18,26,33,45§,54,73 |
+ |
6,11,18 |
|
|
||||
|
950496 |
anal virapap swab |
6,16,45§,53,58‡,61,70§,83,84 |
+ |
6 |
|
|
||||
|
071455 |
anal preservecyt swab |
42 |
+ |
- |
|
|
||||
|
071537 |
anal preservecyt swab |
51 |
+ |
- |
|
|
||||
|
071113 |
anal preservecyt swab |
71 |
+ |
- |
|
|
||||
|
071424 |
anal preservecyt swab |
81 |
+ |
- |
|
|
||||
|
963601 |
Cervical lavage |
67‡ |
+ |
- |
|
|
||||
|
950475 |
cervical virapap swab |
6 |
+ |
6 |
|
|
||||
|
950505 |
cervical virapap swab |
18 |
+ |
18 |
|
|
||||
|
950507 |
cervical virapap swab |
26 |
+ |
- |
|
|
||||
|
962678 |
cervical virapap swab |
31‡ |
+ |
- |
|
|
||||
|
950433 |
cervical virapap swab |
32 |
+ |
- |
|
|
||||
|
962047 |
cervical virapap swab |
53 |
+ |
- |
|
|
||||
|
950479 |
cervical virapap swab |
54 |
+ |
- |
|
|
||||
|
972833 |
cervical virapap swab |
55* |
+ |
- |
|
|
||||
|
962721 |
cervical virapap swab |
66 |
+ |
- |
|
|
||||
|
972835 |
cervical virapap swab |
82 |
+ |
- |
|
|
||||
|
971371 |
cervical virapap swab |
84 |
+ |
- |
|
|
||||
|
036465 |
cervical virapap cytobrush |
58‡ |
+ |
- |
|
|
||||
|
040670 |
cervical preservecyt swab |
56 |
+ |
- |
|
|
||||
|
CL1 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL2 |
Cervical lavage |
N/D |
+ |
6/16 |
|
|
||||
|
CL3 |
Cervical lavage |
N/D |
+ |
- |
|
|
||||
|
CL4 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL5 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL6 |
Cervical lavage |
N/D |
+ |
6 |
|
|
||||
|
CL7 |
Cervical lavage |
N/D |
+ |
6,18 |
|
|
||||
|
CL8 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL9 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL10 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL11 |
Cervical lavage |
N/D |
+ |
- |
|
|
||||
|
CL12 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL13 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL14 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL15 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL16 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL17 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL18 |
Cervical lavage |
N/D |
+ |
- |
|
|
||||
|
CL19 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL20 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL21 |
Cervical lavage |
N/D |
+ |
6 |
|
|
||||
|
CL22 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL23 |
Cervical lavage |
N/D |
+ |
- |
|
|
||||
|
CL24 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
CL25 |
Cervical lavage |
N/D |
- |
- |
|
|
||||
|
A1 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A2 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A3 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A4 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A5 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A6 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A7 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A8 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A9 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A10 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A11 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
A12 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B1 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B2 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B3 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B4 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B5 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B6 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B7 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B8 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B9 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B10 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B11 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
B12 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
C1 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C2 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C3 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C4 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C5 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C6 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C7 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
C8 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
C9 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
C10 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
C11 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
C12 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D1 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D2 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D3 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D4 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D5 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D6 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D7 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D8 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D9 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D10 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D11 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
D12 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
E1 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
E2 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
E3 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
E4 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
E5 |
S/D Oral biopsy |
N/D |
- |
- |
|
|
||||
|
E6 |
S/D Oral biopsy |
N/D |
+ |
16 |
|
|
||||
|
3 |
NS/ND Oral biopsy |
16 |
N/D |
16 |
|
|
||||
|
4 |
NS/ND Oral biopsy |
16 |
N/D |
16 |
|
|
||||
|
7 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
9 |
NS/ND Oral biopsy |
16 |
N/D |
16 |
|
|
||||
|
12 |
NS/ND Oral biopsy |
16 |
N/D |
- |
|
|
||||
|
13 |
NS/ND Oral biopsy |
16 |
N/D |
16 |
|
|
||||
|
15 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
16 |
NS/ND Oral biopsy |
- |
N/D |
18 |
|
|
||||
|
18 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
20 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
21 |
NS/ND Oral biopsy |
18 |
N/D |
- |
|
|
||||
|
23 |
NS/ND Oral biopsy |
16 |
N/D |
- |
|
|
||||
|
27 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
32 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
35 |
NS/ND Oral biopsy |
18 |
N/D |
6/18 |
|
|
||||
|
36 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
37 |
NS/ND Oral biopsy |
18 |
N/D |
- |
|
|
||||
|
38 |
NS/ND Oral biopsy |
- |
N/D |
- |
|
|
||||
|
39 |
NS/ND Oral biopsy |
18 |
N/D |
- |
|
|
||||
|
40 |
NS/ND Oral biopsy |
16 |
N/D |
16 |
|
|
||||
|
51 |
NS/ND Oral biopsy |
16 |
N/D |
16 |
|
|
||||
|
52 |
NS/ND Oral biopsy |
16 |
N/D |
- |
|
|
||||
|
082481 |
Foot plantar wart |
2 |
+ |
- |
|
|
||||
|
082458 |
Foot plantar wart |
57 |
+ |
- |
|
|
||||
|
MX1 |
28 |
+ |
- |
|
|
|
||||
|
MX2 |
64 |
+ |
- |
|
|
|
||||
|
HPV6/11-related; *, HPV16-related; ‡, HPV18-related; §, N/D; not determined |
||||
|
Seaman et al. Virology Journal 2010 7:194 doi:10.1186/1743-422X-7-194 |
||||
