|
Kozak contexts of VP6 AUG codons in BTV. Kozak contexts of AUG codons upstream of ORFX in BTV for the 34 segment 9 sequences which appear to contain the complete 5'UTR. Kozak contexts are assumed to be 'strong' if there is 'G' at +4 and an 'A' or 'G' at -3, 'medium' if one of these is present, and 'weak' if neither are present. |
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| One upstream AUG codon |
Two upstream AUG codons |
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|
|
|
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| First |
Strength |
Number |
First |
Second |
Strength |
Number |
|||
| -3 |
+4 |
-3 |
+4 |
-3 |
+4 |
||||
|
|
|
||||||||
| G |
C |
medium |
5 |
C |
U |
U |
G |
weak-medium |
15 |
| A |
A |
medium |
1 |
C |
U |
G |
C |
weak-medium |
9 |
| C |
U |
weak |
1 |
C |
U |
A |
A |
weak-medium |
1 |
| C |
U |
A |
G |
weak-strong |
1 |
||||
| C |
U |
C |
C |
weak-weak |
1 |
||||
Firth Virology Journal 2008 5:48 doi:10.1186/1743-422X-5-48 |
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