Table 1

A selected list of mimivirus genes with closely related sequences in the GOS data.

Mimivirus ORF

Annotation

Number of "mimivirus-like" sequences in the GOS data


NCLDV class I core genes

MIMI_L206 *

Helicase III/VV D5-type ATPase (C-term)

139

MIMI_L207 *

Helicase III/VV D5-type ATPase (N-term)

90

MIMI_R322

DNA polymerase (B family)

185

MIMI_R350

putative transcription termination factor, VV D6R helicase

90

MIMI_L396

VV A18 helicase

138

MIMI_R400

S/T protein kinase

32

MIMI_L425

Major capsid protein

7

MIMI_L437

VV A32 virion packaging ATPase

71

MIMI_R450

A1L transcription factor

28

MIMI_R596

Thiol oxidoreductase E10R

7

NCLDV class II core genes

MIMI_R339

TFII-like transcription factor

3

MIMI_R493

Proliferating Cell Nuclear Antigen

45

NCLDV class III core genes

MIMI_L244

Rpb2

1

MIMI_L364

SW1/SNF2 helicase (MSV224)

54

MIMI_R382

mRNA Capping Enzyme

189

MIMI_R429

PBCV1-A494R-like, 9 paralogs

145

MIMI_R480

Topoisomerase II

1

MIMI_R501

Rpb1

14

Translation

MIMI_L496

Translation initiation factor 4E, (mRNA cap binding)

11

MIMI_R624

GTP binding elongation factor eF-Tu

3

DNA repair

MIMI_L315

Hydrolysis of DNA containing ring-opened N7 methylguanine

58

MIMI_L359

DNA mismatch repair ATPase MutS

44

MIMI_R406

Alkylated DNA repair

3

MIMI_L687

Endonuclease for the repair of UV-irradiated DNA

2

MIMI_R693

Methylated-DNA-protein-cysteine methyltransferase

9

Other genes with more than 100 matches

MIMI_L250

putative transcription initiation factor IIB

143

MIMI_L251

Lon domain protease

110

MIMI_R303

NAD-dependent DNA ligase

163

MIMI_R325

Metal-dependent hydrolase (Chilo iridescent virus 136R)

136

MIMI_R354

Lambda-type exonuclease

147

MIMI_R355

Unknown

150

MIMI_L375

Unknown

130

MIMI_L377

putative NTPase I

133

MIMI_R409

Unknown

155

MIMI_L434

Unknown

103

MIMI_R453

TATA-box binding protein (TBP)

131

MIMI_L454

Unknown

119

MIMI_R555

putative DNA repair protein

249

MIMI_R563

Contains helicase conserved C-terminal domain (PFAM)

118


* Two ORFs (L206, L207) have been recently merged into a single ORF after the re-sequencing of the genomic region (SWISS-PROT: Q5UQ22, St├ęphane Audic, personal communication).

Monier et al. Virology Journal 2008 5:12   doi:10.1186/1743-422X-5-12

Open Data