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Probes for Epstein-Barr Virus genes |
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| Oligo Name |
nt |
Transcript Length (bp) |
Distance from 3' (bp) |
Tm (°C) |
GC (%) |
Design |
Sense Probe Sequence (5' to 3') |
|
|
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| EBNA1_AD.1 |
60 |
1131 |
202 |
76.1 |
45.0 |
AD |
TTTGAAGGATGCGATTAAGGACCTTGTTATGACAAAGCCCGCTCCTACCTGCAATATCAG |
| EBNA1_AD.2 |
60 |
1131 |
803 |
79.0 |
55.0 |
AD |
GAGAGGTCGTGGACGTGGAGAAAAGAGGCCCAGGAGTCCCAGTAGTCAGTCATCATCATC |
| EBNA2_AD.1 |
60 |
1464 |
687 |
79.0 |
53.3 |
AD |
GCACCCTCTTACTCATCAAAGCACCCCAAATGATCCAGATAGTCCAGAACCACGGTCCCC |
| EBNA3A_AD.1 |
60 |
1360 |
29 |
76.9 |
48.3 |
AD |
GAAGCCATTCTCCGCAGGTTTCCACTAGATCTAAGAACACTTCTTCAAGCGATTGGAGCC |
| EBNA3C_AD.1 |
60 |
2973 |
129 |
79.2 |
53.3 |
AD |
GACCTGCCCGGTGTTCCCAAGCTACTGCTGAAGCACAGGAGATTCTCAGTGACAATTCTG |
| EBNA3C_AD.2 |
60 |
2973 |
893 |
79.1 |
51.7 |
AD |
TAAGGCCCAGCCCATAGAAAGTTCACACTTGAGTTCCATGTCGCCCACACAGCCGATATC |
| LMP1.70 mer |
70 |
2038 |
813 |
88.3 |
47.1 |
PE |
CTGTTCATCTTTGGCTGCTTACTTGTCTTCGGTATCTGGATCTACTTCTTGGAGATTCTCTGGCGGCTTG |
| LMP 2A&2B.70 mer |
70 |
1196 |
53 |
94.5 |
54.3 |
PE |
CCGACCCCATATCGCAACACTGTATAAAGAATGCCCACCAGATCGCCTGCCACTTCCACAGCAATGGCAC |
| LMP2_AD.1 |
60 |
1196 |
199 |
77.0 |
48.3 |
AD |
AATGGCGACCGTCACTCGGACTATCAACCACTAGGAACCCAAGATCAAAGTCTGTACTTG |
| BZLF1.70 mer |
70 |
1767 |
280 |
90.3 |
47.1 |
PE |
ACGCACACGGAAACCACAACAGCCAGAATCGCTGGAGGAATGCGATTCTGAACTAGAAATAAAGCGATAC |
| gp85.70 mer |
70 |
2121 |
90 |
93.3 |
51.4 |
PE |
TCCACGTTCACTATCTGCTGCTGACCACCAACGGGACTGTCATGGAAATTGCGGGCCTGTATGAAGAAAGAG |
| gp85_AD.1 |
60 |
2121 |
491 |
76.8 |
48.3 |
AD |
ATTATCCCGCTCATCAATGTGACATTCATAATCTCTAGTGACCGTGAGGTCCGAGGCTCG |
| gL_AD.1 |
60 |
414 |
294 |
77.7 |
48.3 |
AD |
CGCGTTGGAAAACATTAGCGACATTTACCTGGTGAGCAATCAGACATGCGACGGCTTTAG |
| g42_AD.1 |
60 |
672 |
259 |
76.0 |
46.7 |
AD |
CAACGCCCGATATTCTACCTGTGGTAACTAGAAATCTGAATGCCATTGAGTCCCTTTGGG |
|
AD: ArrayDesign; PE: Primer Express | |||||||
Bernasconi et al. Virology Journal 2006 3:43 doi:10.1186/1743-422X-3-43 |
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