|
Probes for housekeeping genes |
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| Oligo Name |
Unigene |
nt |
Transcript Length (nt) |
Distance from 3' (nt) |
Tm (°C) |
GC (%) |
Design |
Sense Probe Sequence (5' to 3') |
|
|
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| RPL37A |
Hs.433701 |
70 |
1059 |
607 |
78.3 |
50.0 |
CS |
AGGCCTTCCCGAGAAAGTGCTTAGCCTTGTTGATGATCCAAGGAACCACATAGAGAACCAAGACGAGTGC |
| KIAA0220 |
Hs.110613 |
70 |
1121 |
416 |
82.4 |
60.0 |
CS |
TGGAACCATCATCACCCGAACCCAAGAGGCGGAGGGTCGGTGACGTGGAACCGTCACGCAAACCCAAGAG |
| CLU |
Hs.75106 |
70 |
1676 |
903 |
82.4 |
60.0 |
CS |
TTTCCCAAGTCCCGCATCGTCCGCAGCTTGATGCCCTTCTCTCCGTACGAGCCCCTGAACTTCCACGCCA |
| MTA2 |
Hs.118786 |
70 |
1929 |
154 |
78.8 |
51.4 |
CS |
GCAAGAAGTTACGACACGTACACAACGACAGAACAACAGAGAAGACCCCGAAGACCACTAGCACGACCGT |
| 384D8-2.2 |
Hs.356523 |
71 |
2281 |
334 |
80.6 |
52.2 |
CS |
CGAAGGAAAGTGGAGCTCTTCATCGCCACCTCCCAGAAGTTTATCCAGGAGACAGAGCTGAGCCAGCGCA |
|
|
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| FTL |
Hs.118786 |
70 |
1929 |
154 |
78.8 |
51.4 |
CS |
CTCTCTCTTTCAGGCCTCAACAGGCACTGTATTCATTGCCAATGTTCCAAATTATCAAATTCAAGTGAAT |
| PSMD2 |
Hs.74619 |
70 |
2828 |
122 |
75.9 |
44.3 |
CS |
TATCTTCGGAAGAACCCCAATTATGATCTCTAAGTGACCACCAGGGGCTCTGAACTGTAGCTGATGTTAT |
| PSMB3 |
Hs.82793 |
70 |
692 |
42 |
79.4 |
52.8 |
CS |
ATCATCGAGAAGGACAAAATCACCACCAGGACACTGAAGGCCCGAATGGACTAACCCTGTTCCCAGAGCC |
| T CFL1 |
Hs.2430 |
70 |
1324 |
153 |
76.5 |
46.2 |
CS |
CCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGAAGAGATGTCTAGTCCTCAGAAACTTCTTTCCTGC |
| H3F3A |
Hs.181307 |
70 |
1305 |
20 |
73.6 |
38.5 |
CS |
GAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTTGCTA |
| PTDSS1 |
Hs.77329 |
70 |
2504 |
242 |
77.7 |
48.6 |
CS |
GTAGCTGCCTGCATAGGAGCCTCGCTTCCGATTATTCCCTTCCCAATATTATTCATCCAGACTTAGCCAC |
| KARS |
Hs.3100 |
70 |
1997 |
142 |
73.6 |
38.6 |
CS |
GCAACCACTGATACACTGGAAAGCACAACAGTTGGCACTTCTGTCTAGAAAATAATAATTGCAAGTTGTA |
| AAMP |
Hs.83347 |
70 |
1762 |
622 |
81.2 |
57.1 |
CS |
ACCTTGGCCATCTATGACCTGGCTACGCAGACTCTTAGGCATCAGTGTCAGCACCAGTCGGGCATCGTGC |
|
|
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| β-actinsense |
Hs.288061 |
68 |
1841 |
431 |
92.7 |
50.0 |
PE |
TTAAAAACTGGAACGGTGAAGGTGACAGCAGTCGGTTGGAGCGAGCATCCCCCAAAGTTCACAATGTG |
| β-actin.70 mer |
Hs.288061 |
71 |
1841 |
700 |
96.0 |
56.3 |
PE |
CCTGGCACCCAGCACAATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCG |
| c-yes.70 mer |
Hs.194148 |
70 |
4343 |
1249 |
96.7 |
62.9 |
PE |
CTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGG |
| c-yes.2 |
Hs.194148 |
70 |
539 |
73.6 |
52.2 |
CS |
CATGCAAGTTGGCAGTGGTTCTGGTACTAAAAATTGTGGTTGTTTTTTCTGTTTACGTAACCTGCTTAGT |
|
| MHCI.70 mer |
Hs.379218 |
70 |
2290 |
600 |
92.7 |
55.7 |
PE |
CTCAGATAGAAAAGGAGGGAGCTACTCTCAGGCTGCAAGCGGCAACAGTGCCCAGGGCTCTGATGTGTCT |
| HMBS.70 mer |
Hs.82609 |
70 |
1536 |
1300 |
97.7 |
57.0 |
PE |
ACGGCAATGCGGCTGCAACGGCGGAAGAAAACAGCCCAAAGATGAGAGTGATTCGCGTGGGTACCCGCAA |
| HMBS.2 |
Hs.82609 |
70 |
164 |
82.4 |
52.2 |
CS |
TGCTGTCCAGTGCCTACATCCCGGGCCTCAGTGCCCCATTCTCACTGCTATCTGGGGAGTGATTACCCCG |
|
| EF1.70 mer |
Hs.181165 |
71 |
1833 |
500 |
91.8 |
50.7 |
PE |
GGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAG |
|
CS: Church set; PE: Primer Express | ||||||||
Bernasconi et al. Virology Journal 2006 3:43 doi:10.1186/1743-422X-3-43 |
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