|
Pfam hits for novel ORFs |
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| ORF |
Pfam Domain name |
E value |
|
|
||
| 44RRORF008c |
Serine hydroxymethyltransferase |
9.80E-180 |
| 44RRORF084c |
TM2 domain |
3.80E-14 |
| 44RRORF093c |
Glutathionylspermidine synthase |
8.30E-109 |
| 44RRORF097c |
Prokaryotic N-terminal methylation motif |
3.70E-09 |
| 44RRORF098c |
SPFH domain/Band 7 family |
1.10E-06 |
| 44RRORF109c |
Glutaredoxin-like domain (DUF836) |
0.016 |
| 44RRORF111c |
Ribonucleotide reductase, small chain |
4.00E-06 |
| 44RRORF130c |
Prokaryotic dksA/traR C4-type zinc finger |
4.30E-05 |
| 44RRORF168c |
HD domain |
0.34 |
| 44RRORF232c |
Domain of unknown function (DUF1732) |
0.35 |
| 44RRORF234c |
Sodium:solute symporter family |
2.60E-34 |
| 44RRORF238c |
Putative metallopeptidase (SprT family) |
0.33 |
| Aeh1ORF004c |
CYTH domain |
0.14 |
| Aeh1ORF010c |
dUTPase |
5.10E-25 |
| Aeh1ORF025c |
Carbohydrate binding domain |
0.4 |
| Aeh1ORF026c |
Carbohydrate binding domain |
0.12 |
| Aeh1ORF040c |
Prokaryotic N-terminal methylation motif |
6.60E-09 |
| Aeh1ORF062c |
Putative metallopeptidase (SprT family) |
0.00035 |
| Aeh1ORF064c |
SPFH domain/Band 7 family |
2.40E-05 |
| Aeh1ORF068c |
Bacterial transferase hexapeptide (3 repeats) |
0.32 |
| Aeh1ORF110c |
HD domain |
0.0078 |
| Aeh1ORF111c |
UV-endonuclease UvdE |
3.60E-20 |
| Aeh1ORF131c |
Poly(ADP-ribose) polymerase catalytic domain |
0.026 |
| Aeh1ORF132c |
ADP-ribosylglycohydrolase |
1.10E-05 |
| Aeh1ORF154c |
von Willebrand factor type A domain |
0.22 |
| Aeh1ORF157c |
CreA protein |
4.40E-09 |
| Aeh1ORF227c |
RyR domain |
0.0054 |
| Aeh1ORF230c |
Bacterial regulatory proteins, lacI family |
0.14 |
| Aeh1ORF245c |
GatB/Yqey domain |
0.17 |
| Aeh1ORF289c |
Poly A polymerase family |
9.00E-31 |
| Aeh1ORF318w |
Phage T4 tail fibre |
8.10E-06 |
| RB43ORF020c |
LysM domain |
1.70E-07 |
| RB43ORF057w |
DnaJ domain |
2.70E-05 |
| RB43ORF119c |
von Willebrand factor type A domain |
0.02 |
| RB43ORF127c |
C-5 cytosine-specific DNA methylase |
1.20E-117 |
| RB43ORF139c |
SPFH domain/Band 7 family |
3.80E-05 |
| RB43ORF157c |
PhoH-like protein PIN domain |
4.20E-15 0.0032 |
| RB43ORF179c |
DnaJ central domain (4 repeats) |
0.28 |
| RB43ORF191c |
DnaJ central domain (4 repeats) |
0.22 |
| RB43ORF205w |
Protein of unknown function (DUF1054) |
0.43 |
| RB43ORF241c |
Zeta toxin |
0.36 |
| RB43ORF282w |
Phage tail fibre adhesin Gp38 |
0.0035 |
| RB49ORF044c |
DEAD/DEAH box helicase |
0.069 |
| RB49ORF046c |
Prokaryotic N-terminal methylation motif |
0.43 |
| RB49ORF102c |
D-alanyl-D-alanine carboxypeptidase |
0.0014 |
| RB49ORF143w |
Methyltransferase small domain Ribosomal RNA adenine dimethylase |
0.0011 0.33 |
| RB49ORF188c |
TFIIB zinc-binding |
0.22 |
| RB49ORF239c |
Protein of unknown function (DUF723) |
0.098 |
| RB49ORF244c |
CYTH domain |
0.0026 |
| RB49ORF260c |
Protein of unknown function (DUF1311) |
0.2 |
| RB69ORF048c |
Thymidylate synthase |
0.022 |
| RB69ORF050c |
Peptidase family U32 |
0.00055 |
| RB69ORF053c |
Nucleotidyl transferase |
0.0022 |
| RB69ORF055c |
SIS domain |
0.0043 |
| RB69ORF104c |
Oleosin |
0.42 |
| Putative mobile DNA elements |
||
| RB43ORF027c |
AP2 domain |
0.00071 |
| RB43ORF066w |
LAGLIDADG endonuclease |
0.15 |
| RB49ORF040c |
AP2 domain HNH endonuclease |
2.20E-07 0.0042 |
| RB49ORF212c |
HNH endonuclease |
9.20E-07 |
| Putative nucleotide salvage enzymes |
||
| 44RRORF072c |
Nicotinate phosphoribosyltransferase |
9.80E-63 |
| 44RRORF083c |
NUDIX domain |
7.10E-15 |
| Aeh1ORF119c |
Nicotinate phosphoribosyltransferase |
1.30E-46 |
| Aeh1ORF282c |
NUDIX domain Cytidylyltransferase |
8.30E-12 5.80E-05 |
| Aeh1ORF330c |
NUDIX domain |
3.00E-08 |
| RB43ORF138c |
NUDIX domain Cytidylyltransferase |
1.90E-13 5.30E-05 |
| RB43ORF255w |
Nicotinate phosphoribosyltransferase |
4.50E-44 |
|
Predicted ORF protein sequences were used to search Pfam using HMMer. Matches with E < 0.5 are shown. Multiple matches are shown for ORFs having non-overlapping matches to more than one domain. | ||
Nolan et al. Virology Journal 2006 3:30 doi:10.1186/1743-422X-3-30 |
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