Genetic diversity among five T4-like bacteriophages

doi:10.1186/1743-422X-3-30

Virology Journal

Volume 3

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Genetic diversity among five T4-like bacteriophages

James M Nolan¹^,2 , Vasiliy Petrov² , Claire Bertrand³ , Henry M Krisch³ and Jim D Karam²

¹Department of Biological Sciences, University of New Orleans, 2000 Lakeshore Dr., New Orleans, LA 70148, USA

²Department of Biochemistry, Tulane University Health Sciences Center, 1430 Tulane Ave., New Orleans, LA 70112, USA

³LMGM-CNRS UMR 5100,118, route de Narbonne, 31062 Toulouse cedex 09, France

author email corresponding author email

Virology Journal 2006, 3:30doi:10.1186/1743-422X-3-30


Published:	23 May 2006

Additional files

Additional File 1:

High-resolution genome map. Genome map is as indicated for Figure 1, but predicted gene names are also indicated.

Format: PDF Size: 137KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 2:

Predicted transmembrane and signal peptide matches for ORFs. The amino acid coordinates of each ORF matching Transmembrane [22] orSignal peptide [21] motifs are indicated for each ORF. Multiple transmembrane regions are predicted for some ORFs.

Format: XLS Size: 16KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

Coordinates of predicted early promoters. Coordinates are in GFF format. For promoters on + strand, the 5' end of the sequence is the leftmost coordinate, for promoters on – strand, the 5' end of sequence is the rightmost coordinate. Promoters are named by their 5' end; those that differ in length from the consensus are noted.

Format: XLS Size: 44KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 4:

Coordinates of predicted middle promoters. Coordinates are in GFF format. For promoters on + strand, the 5' end of the sequence is the leftmost coordinate, for promoters on – strand, the 5' end of sequence is the rightmost coordinate. Promoters are named by their 5' end; those that differ in length from the consensus are noted.

Format: XLS Size: 14KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 5:

Coordinates of predicted late promoters. Coordinates are in GFF format. For promoters on + strand, the 5' end of the sequence is the leftmost coordinate, for promoters on – strand, the 5' end of sequence is the rightmost coordinate. Promoters are named by their 5' end.

Format: XLS Size: 24KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 6:

Coordinates of Predicted rho-independent terminators. Coordinates are in GFF format. For promoters on + strand, the 5' end of the sequence is the leftmost coordinate, for promoters on – strand, the 5' end of sequence is the rightmost coordinate. Bidirectional terminators have the strand designation "." Terminators are named according to their flanking genes.

Format: XLS Size: 47KB Download file

This file can be viewed with: Microsoft Excel Viewer