Table 1

Matching Status of Mimivirus core genes (type 1 to 4).

ORF#

Definition

Best score in nr

Best score in DNA viruses

Best score in Sargasso Sea

Status

Reciprocal Best match


L206

Helicase III / VV D5

167-virus

167

214

Best ENV

YES

R322

DNA pol (B family) extein

207

167

238

Best ENV

YES

L437

A32 virion packaging ATPase

169-virus

169

191

Best ENV

YES

L396

VV A18 helicase

200-virus

200

187

-

L425

Capsid protein

119-virus

117

142

Best ENV

complex

R439

Capsid protein

164-virus

159

173

Best ENV

complex

R441

Capsid protein

137-virus

147

209

Best ENV

complex

R596

E10R-Thiol oxidoreductase

104-virus

105

119

Best ENV

YES

R350

VV D6R – helicase

170-virus

170

102

-

R400

F10L – prot. Kinase

86-virus

86

58

-

R450

A1L-transcr factor

52-virus

47

65

Best ENV

R339

TFII-transcr. factor

62

42

66

Best ENV

L524

MuT-like NTP PP-hydrolase

40

38

39

-

L323

Myristoylated virion prot. A

43

42

40

-

R493

PCNA

92

87

154

Best ENV

YES

L312

Small Ribonucl. reduct

341

338

310

-

R313

Large Ribonucl. reduct

766

741

740

-

R429

PBCV1-A494R-like

152-virus

152

216

Best ENV

YES

L37

BroA, KilA-N

123-virus

124

65

-

R382

mRNA-capping enz.

86

78

166

Best ENV

YES

L244

RNA pol. sub 2 (Rbp2)

727

416

508

-

R501

RNA pol. sub.1 (Rpb1)

805

415

520

-

R195

ESV128-Glutaredoxin

50

39

49

-

R622

S/Y phosphatase

75

73

65

-

R311

CIV193R BIR domain

68

44

51

-

L65

Virion memb. prot

44

44

-

-

R480

Topoisomerase II

902

717

367

-

L221

Topoisomerase I bacterial

528

35

516

-

R194

Topoisomerase I pox-like

188

100

145

-

L364

SW1/SNF2 helicase

70-virus

70

72

Best ENV

YES

L4

N1R/P28 DNA binding prot

123-virus

124

72

-

L540

Pre-mRNA helicase – splicing

256

136

214

-

L235

RNA pol subunit5

69

38

50

-

R354

Lambda-type exonuclease

69-virus

69

154

Best ENV

YES

R343

RNAse III

129

112

131

Best ENV

YES

R141

GDP mannose 4,6-dehydratase

294

68

252

-

L258

Thymidine kinase

151

140

124

-

L271

Ankyrin repeats (66 paralogs)

179

152

192

Best ENV

complex

R325

Metal-dependent hydrolase

69-virus

69

105

Best ENV

YES

L477

Cathepsin B

226

43

47

-

R497

Thymidylate synthase

278

242

217

-

R449

Uncharacterized prot.

69-virus

69

129

Best ENV

YES

R303

NAD-dependent DNA ligase

270-virus

270

228

-

L805

MACRO domain

36

33

-

-

R571

Patatin-like phospholipase

105

80

122

Best ENV

YES

R301

Uncharacterized prot.

48-virus

48

65

Best ENV

YES


Ghedin and Claverie Virology Journal 2005 2:62   doi:10.1186/1743-422X-2-62

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