|
Element occurrence frequencies within viral and Arabidopsis sequence databases |
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| Element Identifier |
Element Sequence |
Occurrence frequency from each database. Values are relative to Arabidopsis CDS = 1.00 (Mean of 18 matched oligomer frequencies) |
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|
|
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| Arabidopsis -3000 to -1001 |
Arabidopsis -1000 to -501 |
Arabidopsis -500 to -1 |
Arabidopsis CDS |
Gemini + nanovirus |
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|
|
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| Previously Identified Promoter Elements from A. thaliana (*also confirmed as geminiviral element) |
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|
|
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| ABRE-like |
ACGTGKM |
1.65 (1.72) |
1.78 (1.8) |
3 (1.44) |
1 (1.59) |
2.45 (1.28) |
| DRE |
RCCGAC |
1.86 (1.75) |
1.81 (1.55) |
2.13 (1.46) |
1 (1.13) |
1.09 (0.85) |
| G-box* |
CACGTG |
2.28 (1.79) |
2.57 (1.58) |
4.35 (1.47) |
1 (1.41) |
3.81 (1.43) |
|
|
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| Consensus Gemini/Nanoviral Sequence Elements (**not a promoter element) |
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|
|
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| CLE |
GTGGNCCC |
3.15 (3.51) |
3.62 (2.99) |
3.9 (2.79) |
1 (1.56) |
17.36 (2.81) |
| DR08/13 |
TCTCTCTCTA |
3.15 (0.46) |
3.6 (0.4) |
7.75 (0.35) |
1 (0.51) |
6.92 (0.53) |
| BCTV DR19/30 |
AAACTTC |
0.7 (0.62) |
0.69 (0.64) |
0.68 (0.66) |
1 (0.72) |
0.64 (0.52) |
| GV rep-stem** |
CGCGNCCA |
2.52 (3.51) |
2.2 (2.99) |
2.26 (2.79) |
1 (1.89) |
17.11 (3.42) |
Velten et al. Virology Journal 2005 2:16 doi:10.1186/1743-422X-2-16 |
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