Table 3

The positions of nucleotide variation in LCRs from the HPV16 variant sub-lineages
nt. position 7177 7193 7201 7270 7287 7289 7429 7521 7730 7842 7874 24 28 46 61 81
Prototypea T G T C A A G G A G C C G T T G
Asb (no. 15) C T C T C C G A C A C T G T T T
Asb (no. 36) C T C T C C G A C A C T G T T T
As-sv1c (no. 30) C T C T C C A A C A G T G T T T
As-sv14c (no. 42) C T C T C C A A C A G T A^ G^ G^ T
nt. position 7193 7233 7339 7394 7395 7485 7489 7521 7669 7689 7729 7743 7764 7786 7886 28
Prototypea G A A C C A G G C C A T C C C G
EUR (no. 43) G A A C C A G A C C A T C C C A^
AA1 (no. 47) T T T T T C A A T A C G T T G G

aHPV16 prototype LCR, the reference sequence [GenBank:AY686584].

bHPV16As LCR, the sequence found in previous studies in other continents.

cHPV16As sub-variant LCR, the novel sequence variation reported in this study.

Pientong et al.

Pientong et al. Virology Journal 2013 10:30   doi:10.1186/1743-422X-10-30

Open Data