Table 3

Percent nucleotide (nt) and deduced amino acid (aa) identities of the entire ORF, VP1 and 3Dpol genes of Sing-M105-02 compared to Sing-M100-02, other EMCV and The ilovirus strains (all members of the Cardiovirus genus)
ORF VP1 3Dpol
Virus strain nt aa nt aa nt aa
EMCV Sing-M100-02 99.9 99.9 99.9 99.6 100.0 100.0
EMCV D (M22458) 75.2 86.3 73.6 86.3 78.4 88.9
EMCV B (M22457) 75.1 86.3 73.5 86.3 78.4 89.8
EMCV D (M37588) 75.3 86.4 73.5 86.3 78.6 89.8
EMCV PV2 (X87335) 75.3 86.4 73.4 85.9 78.6 89.8
EMCV G424-90 (AJ617362) NA 73.3 85.2 NA
EMCV pEC9 (DQ288856) 75.5 86.6 73.3 87.0 79.2 88.9
EMCV BEL-288791 (AF356822) 75.6 86.7 73.2 86.6 79.2 89.8
EMCV CBNU (DQ517424) 75.6 86.7 73.2 86.3 79.2 88.7
EMCV GX0601 (FJ604852) 75.5 86.6 73.2 86.6 79.1 89.6
EMCV Mengo M (L22089) 75.5 86.6 73.2 87.0 78.6 88.7
EMCV Mengo Rz-pMwt (DQ294633) 75.5 86.6 73.2 87.0 78.6 89.8
EMCV pV21 (X74312) 75.5 86.5 73.2 86.3 79.3 89.6
EMCV GX0602 (FJ604853) 75.4 86.4 73.0 86.6 78.9 89.6
EMCV HB1 (DQ464063) 75.5 86.6 73.0 86.6 79.2 89.8
EMCV K11 (EU780149) 75.5 86.6 73.0 86.3 79.2 89.3
EMCV K3 (EU780148) 75.5 86.3 73.0 85.9 79.1 88.7
EMCV BJC3 (DQ464062) 75.5 86.6 72.9 86.3 79.2 89.8
EMCV GXLC (FJ897755) 75.5 86.4 72.9 85.2 79.0 89.8
EMCV R (M81861) 75.4 86.2 72.8 85.6 79.1 90.2
EMCV Ruckert (M81861) 75.4 86.2 72.8 85.6 79.1 89.6
EMCV MN-30 (AY296731) 75.1 86.4 72.4 86.6 78.6 89.8
EMCV 1086C (DQ835185) 74.6 86.9 71.8 87.0 76.4 88.7
EMCV C108-95 (AJ617359) NA 71.1 87.0 NA
EMCV RD1338 (JX257003) 73.6 82.5 61.2 66.1 80.9 89.6
Theilovirus SAFV-1 (EF165067).seq 56.7 53.6 77.4 88.6 60.8 53.5
SAFV-2 (AM922293).seq 57.1 54.0 75.0 85.9 57.5 52.8
TMEV BeAn 8386 (M16020).seq 57.3 54.8 75.3 83.9 58.5 51.0
TMEV BeAn 8386 S2 (DQ401688).seq 57.3 54.9 75.5 83.9 58.7 51.0
TMEV DA (M20301).seq 57.1 55.1 75.5 81.8 60.4 50.6
TMEV GDVII (M20562).seq 57.7 55.0 71.5 78.9 58.1 50.6
TMEV GDVII (X56019).seq 57.7 55.0 71.5 78.9 57.9 50.2

The virus isolate names are shown followed by the GenBank accession number in brackets. The EMCV strains with the highest divergence from Sing-M105-02 and Sing-M100-02 are in bold.

Yeo et al.

Yeo et al. Virology Journal 2013 10:248   doi:10.1186/1743-422X-10-248

Open Data