A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid
1 Instituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, Avda. de los Naranjos s/n, Valencia 46022, Spain
2 Botany, Department of Environmental Sciences, University of Basel, Hebelstrasse 1, Basel CH-4056, Switzerland
3 Facultad de Agronomía e Ingeniería Forestal, Departamento de Ciencias Vegetales, Pontificia Universidad Católica de Chile, Av. Vicuña Mackenna 4860, Macul, Santiago 7820436, Chile
4 Facultad de Ciencias Agronómicas, Departamento de Sanidad Vegetal, Universidad de Chile, Avenida Santa Rosa, Santiago 11315, Chile
Virology Journal 2013, 10:164 doi:10.1186/1743-422X-10-164Published: 28 May 2013
Additional file 1: Figure S1:
Comparison between amounts of PLMVd and PNRSV in infected samples used for profiling. Average ± standard deviation (SD) of pixel intensity corresponding to PLMVd or PNRSV titer at a concentration of 0.3ng RNA (see Figure 2). Virus/viroid titer in samples infected with PLMVd (left graph) or PNRSV (right graph) was slightly lower compared to virus/viroid titer in samples infected with both pathogens simultaneously.
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Additional file 2: Table S1:
Genes with significantly altered expression upon the three different infections. Between brackets the number of genes with orthologs in Arabidopsis is shown.
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Additional file 3: Table S2:
Genes with significant expression changes and orthologs in Arabidopsis.
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Additional file 4: Table S3:
Common genes differentially expressed upon each infection scenario. According to the Venn diagrams (Figure 4) the table shows the description of the genes with altered expression which are common between the different combinations of infection. Between brackets the number of genes for each scenario is shown.
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Additional file 5: Table S4:
Genes related with ripening process and with significantly altered expression upon the three different infections. Expansin putative (EXP1), At1g69530; Glutamate dehydrogenase 2 (GDH2), At5g07440; Expansin, putative (EXP8), At2g40610; Auxin-responsive protein / indoleacetic acid-induced protein 9 (IAA9), At5g65670; bZIP transcription factor family protein, similar to common plant regulatory factor 7, At4g34590; Glutamate dehydrogenase 2 (GDH2), At5g07440; Auxin-responsive protein / indoleacetic acid-induced protein 17 (IAA17), At1g04250; Invertase/pectin methylesterase inhibitor family protein, At5g62350; Agamous-like MADS box protein AGL8, At5g60910; Zinc finger (C3HC4-type RING finger) family protein, At5g25560.
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