Table 3

Intra-host variant sites and frequencies in GS FLX sequences from the NA gene in patient D compared to GAIIx sequences
nt (Residue) Dom Base Freq GS FLX Freq GAIIx Alt Base Freq GS FLX Freq GAIIx Total Coverage GS FLX Total Coverage GAIIx Variation (%) GS FLX Variation (%) GAIIx
458 (S153N) G 51 128 A 0 10 51 138 0 7
823 (H275Y) T 114 134 C 18 4 132 138 86 97

Footnotes: ‘nt’ refers to nucleotide; ‘Dom’ refers to dominate base (G = S153, T = 275Y); ‘Freq’ refers to frequency; ‘Alt’ denotes alternative (A = 153N, C = H275).

Fordyce et al.

Fordyce et al. Virology Journal 2013 10:116   doi:10.1186/1743-422X-10-116

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